| Fox River | Lower Fox River (Appleton Dam To L. Winnebago Outlet) | 32.18 | 40.09 | 7.91 | RIVER | 117900 | Brown, Columbia, Green Lake, Marquette, Outagamie, Waushara, Winnebago | 2021 | Poor | | |
| Little Lake Butte Des Morts | Little Lake Butte Des Morts -- Menasha - Fritze Park Beach Access | 0.00 | 0.01 | 0.01 | INLAND BEACH | 129800 | Winnebago | 2023 | Unknown | | |
| Little Lake Butte Des Morts | Little Lake Butte Des Morts (Herb and Dolly Smith Park Beach Access) | 0.00 | 0.03 | 0.03 | INLAND BEACH | 129800 | Winnebago | 2017 | Unknown | | |
| Little Lake Butte Des Morts | Little Lake Butte Des Morts | | | 1200.32 | LAKE | 129800 | Winnebago | 2023 | Good | | |
| Mud Creek | Mud Creek | 0.00 | 3.71 | 3.71 | RIVER | 129500 | Outagamie, Winnebago | 2023 | Poor | | |
| Neenah Channel | Neenah Channel | | | 101.62 | BAY/HARBOR | 130600 | Winnebago | 2024 | Unknown | | |
| Neenah Slough | Neenah Slough | 0.00 | 2.77 | 2.77 | RIVER | 130800 | Winnebago | 2023 | Poor | | |
| Neenah Slough | Neenah Slough | 2.77 | 3.54 | 0.77 | RIVER | 130800 | Winnebago | 2018 | Poor | | |
| Neenah Slough | Neenah Slough | 3.55 | 6.12 | 2.57 | RIVER | 130800 | Winnebago | 2023 | Poor | | |
| Unnamed | Unnamed Stream | 0.00 | 1.88 | 1.88 | RIVER | 5023288 | Winnebago | 2017 | Unknown | | |
| Unnamed | Unnamed Stream | 0.00 | 3.13 | 3.13 | RIVER | 5023168 | Winnebago | 2017 | Unknown | | |
| Unnamed | Unnamed Stream | 0.00 | 3.29 | 3.29 | RIVER | 130900 | Winnebago | 2018 | Good | | |
| Unnamed | Little Lake Butte Des Morts Tributary | 0.00 | 3.75 | 3.75 | RIVER | 130500 | Winnebago | 2017 | Suspected Poor | | |
| Unnamed | Unnamed Stream | 0.00 | 6.35 | 6.35 | RIVER | 129600 | Outagamie, Winnebago | 2018 | Good | | |
| Unnamed | Un Lake | | | 1.45 | LAKE | 115000 | Winnebago | | Unknown | | |
| Unnamed | Local Water | | | 7.96 | LAKE | 3000092 | Winnebago | 2023 | Unknown | | |
| Unnamed | Local Water | | | 2.11 | LAKE | 5554212 | Winnebago | | Unknown | | |
| Unnamed | Local Water | | | 3.04 | LAKE | 5554225 | Winnebago | | Unknown | | |
| Unnamed | Local Water | | | 4.65 | LAKE | 5555027 | Winnebago | | Unknown | | |
| Unnamed | Local Water | | | 4.25 | LAKE | 5555139 | Winnebago | 1981 | Unknown | | |
| Unnamed | Local Water | | | 2.60 | LAKE | 5555273 | Winnebago | | Unknown | | |
| Unnamed | Local Water | | | 4.19 | LAKE | 5555300 | Winnebago | | Unknown | | |
| Unnamed | Local Water | | | 2.18 | LAKE | 5589870 | Winnebago | | Unknown | | |
| Unnamed | Local Water | | | 2.25 | LAKE | 5589871 | Winnebago | 2008 | Unknown | | |